Thank you for producing genesis. I've successfully compiled it and the two demo apps, and I can run visualize_placements successfully
./visualize_placements test_a.jplace test_a.nexus
Would you please make available some test files for extract_clade_placements? Specifically, I'd like to see a file for the second argument ("A directory path, which needs to contain a single file for each clade of the reference tree.")
We are running epa and pplacer against a reference tree for mammals (16S), and so creating this clade names file will take some effort, and i'd like to see an example.
Thank you in advance, and thank you again for genesis.