I apologize in advance for bothering you again so quickly. I am trying to use the placement_classification_table app with genesis-0.11.0 and it gets stuck. I've tried rebuilding it but that hasn't helped. Here's what I'm getting:
[congxu@lg-1r17-n04 epa]$ placement_classification_table RAxML_portableTree.papara_alignment.16s_torrey.raxmlEPAout.jplace 16s_torrey_papara_table.txt
INFO Using jplace file RAxML_portableTree.papara_alignment.16s_torrey.raxmlEPAout.jplace
INFO Using output file 16s_torrey_papara_table.txt
INFO Found 57 placements.
Nothing happens afterwards and when I force quit, the output file is created but with nothing in it. Thanks for your help!